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If you have not done a required subject for a specific course then you do not meet its qualifications. The only option you have is to apply for another course that you meet all its requirements.
If you are self-employed, you are supposed to pay Ksh. 500 per month. You can dial Dial *155# and follow the prompts to register. You can also register online by visiting nhifcare registration portal or My NHIF mobile app.Check this similar question about NHIF benefits.
You might want to go through driving tutorials published on this page or buy a summary of driving school notes (preparing for a driving test in Kenya).
You cannot apply for KUCCPS twice. The only thing you can do is to apply for transfer. Since transfer is currently not open and does not apply in your case, you might want to write to CEO of kuccps as unique case requesting for transfer.
If you do not qualify for placement to any of the courses you selected, then KUCCPS will place you to any University, College or TVET in a course that you qualify to do.